Glyma20g38580 - SoyBase

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Report for Sequence Feature Glyma20g38580

Feature Type:	gene_model
Chromosome:	Gm20
Start:	46134757
stop:	46136204
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g38580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55120	AT	Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein \| chr3:20430248-20431415 REVERSE LENGTH=246	SoyBase	E_val: 1.00E-95	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0042406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular lyase activity	SoyBase	N/A	ISS
GO:0045430	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chalcone isomerase activity	SoyBase	N/A	ISS
PF02431	PFAM	Chalcone-flavanone isomerase	JGI		ISS
UniRef100_Q53B74	UniRef	Annotation by Michelle Graham. Best UniRef hit: Chalcone--flavonone isomerase 2-A n=3 Tax=Glycine max RepID=CFI2A_SOYBN	SoyBase	E_val: 4.00E-164	ISS
UniRef100_Q53B74	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chalcone--flavonone isomerase 2-A n=3 Tax=Glycine max RepID=CFI2A_SOYBN	SoyBase	E_val: 4.00E-164	ISS

Proteins Associated with Glyma20g38580

Locus	Gene Symbol	Protein Name
	CHI3	chalcone isomerase 2

Expression Patterns of Glyma20g38580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g38580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g241700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g38580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g38580

Limit To All Plant Sequences

>Glyma20g38580.1   sequence type=CDS   gene model=Glyma20g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGCATTTCCGTCCGTAACCTCTGTAACTGTGGAGAACGTGACATTCCCTCCCACCGTGAAGCCTCCCTGCTCCCCCAACACCTTCTTCCTCGCCGGCGCCGGCGTCAGGGGCCTCCAAATTCATCACGCTTTCGTTAAATTCACTGCCATCTGCATTTACCTCCAATACGACGCCCTTTCCTTCCTCTCCGTTAAGTGGAAAACCAAGTCTACTCACCAGTTAACGGAATCCGACCAATTCTTCTCAGATATCGTTACAGGTCCATTCGAGAAATTTATGCAGGTGACAATGATCAAACCCTTGACGGGGCAGCAATACTCAGAGAAAGTGGCAGAAAATTGTGTGGCCATTTGGAGGTCTCTTGGGATTTATACAGATTCAGAAGCCGAAGCAATAGACAAGTTTCTTTCTGTTTTCAAAGACCTAACATTCCCACCAGGCTCCTCTATCCTTTTCACTGTCTCACCCAATGGATCATTAACGATAAGTTTCTCTGGTGATGAAACCATTCCAGAAGTTACGAGTGCTGTTATAGAGAATAAACTACTCTCAGAGGCTGTGTTGGAGTCAATGATAGGTAAGAATGGCGTTTCCCCTGCAGCAAAACAGAGTTTGGCCTCCAGATTATCTCACTTATTCAAAGAGCCTGGGGTTTGTGACCCTCAATCTCATAAGTGA

Predicted protein sequences of Glyma20g38580

Limit To All Plant Sequences

>Glyma20g38580.1   sequence type=predicted peptide   gene model=Glyma20g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAFPSVTSVTVENVTFPPTVKPPCSPNTFFLAGAGVRGLQIHHAFVKFTAICIYLQYDALSFLSVKWKTKSTHQLTESDQFFSDIVTGPFEKFMQVTMIKPLTGQQYSEKVAENCVAIWRSLGIYTDSEAEAIDKFLSVFKDLTFPPGSSILFTVSPNGSLTISFSGDETIPEVTSAVIENKLLSEAVLESMIGKNGVSPAAKQSLASRLSHLFKEPGVCDPQSHK*

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